@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : VGFR1_HUMAN: (2019-05-28 )
MVSYWDTGVLLCALLSCLLLTGSSSGSKLKDPELSLKGTQHIMQAGQTLHLQCRGEAAHKWSLPEMVSKESERLSITKSACGRNGKQFCSTLTLNTAQANHTGFYSCKYLAVPTSKKKETESAIYIFISDTGRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQTNTIIDVQISTPRPVKLLRGHTLVLNCTATTPLNTRVQMTWSYPDEKNKRASVRRRIDQSNSHANIFYSVLTIDKMQNKDKGLYTCRVRSGPSFKSVNTSVHIYDKAFITVKHRKQQVLETVAGKRSYRLSMKVKAFPSPEVVWLKDGLPATEKSARYLTRGYSLIIKDVTEEDAGNYTILLSIKQSNVFKNLTATLIVNVKPQIYEKAVSSFPDPALYPLGSRQILTCTAYGIPQPTIKWFWHPCNHNHSEARCDFCSNNEESFILDADSNMGNRIESITQRMAIIEGKNKMASTLVVADSRISGIYICIASNKVGTVGRNISFYITDVPNGFHVNLEKMPTEGEDLKLSCTVNKFLYRDVTWILLRTVNNRTMHYSISKQKMAITKEHSITLNLTIMNVSLQDSGTYACRARNVYTGEEILQKKEITIRDQEAPYLLRNLSDHTVAISSSTTLDCHANGVPEPQITWFKNNHKIQQEPGIILGPGSSTLFIERVTEEDEGVYHCKATNQKGSVESSAYLTVQGTSDKSNLELITLTCTCVAATLFWLLLTLFIRKMKRSSSEIKTDYLSIIMDPDEVPLDEQCERLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEGATASEYKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDLFFLNKDAALHMEPKKEKMEPGLEQGKKPRLDSVTSSESFASSGFQEDKSLSDVEEEEDSDGFYKEPITMEDLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAPEYSTPEIYQIMLDCWHRDPKERPRFAELVEKLGDLLQANVQQDGKDYIPINAILTGNSGFTYSTPAFSEDFFKESISAPKFNSGSSDDVRYVNAFKFMSLERIKTFEELLPNATSMFDDYQGDSSTLLASPMLKRFTWTDSKPKASLKIDLRVTSKSKESGLSDVSRPSFCHSSCGHVSEGKRRFTYDHAELERKIACCSPPPDYNSVVLYSTPPI

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5T2_A_3(5EW3)
VGFR2_HUMAN
[Raw transfer]




706_B_4(3EFL)

[Raw transfer]




8ST_A_2(3HNG)

[Raw transfer]




608_C_3(2P2I)
VGFR2_HUMAN
[Raw transfer]




608_D_4(2P2I)

[Raw transfer]




706_A_3(3EFL)
VGFR2_HUMAN
[Raw transfer]




BAX_A_2(3WZE)

[Raw transfer]




BAX_A_2(4ASD)

[Raw transfer]




K11_A_2(3EWH)

[Raw transfer]




5T2_B_4(5EW3)

[Raw transfer]




C92_B_4(3CPB)

[Raw transfer]




42Q_A_2(3VHE)

[Raw transfer]




C19_B_4(3CP9)

[Raw transfer]




03X_A_2(3U6J)

[Raw transfer]




03X_A_2(3U6J)

[Raw transfer]




LEV_A_2(3WZD)

[Raw transfer]




C92_A_3(3CPB)
VGFR2_HUMAN
[Raw transfer]




0KF_A_2(3VO3)

[Raw transfer]




F82_A_2(6GQO)

[Raw transfer]




2RL_A_2(2RL5)

[Raw transfer]




C19_A_3(3CP9)
VGFR2_HUMAN
[Raw transfer]




276_A_2(2QU5)

[Raw transfer]




857_B_5(2QU6)

[Raw transfer]




AXI_A_2(4AGC)

[Raw transfer]




F88_A_2(6GQP)
?
[Raw transfer]




0JA_A_2(3VNT)

[Raw transfer]




887_B_5(3B8R)

[Raw transfer]




900_B_4(3B8Q)

[Raw transfer]




RAJ_A_2(3BE2)

[Raw transfer]




C52_B_4(3CPC)

[Raw transfer]




AXI_A_2(4AG8)

[Raw transfer]




C52_A_3(3CPC)
VGFR2_HUMAN
[Raw transfer]




AV9_A_2(4ASE)

[Raw transfer]




887_A_4(3B8R)
VGFR2_HUMAN
[Raw transfer]




AAX_B_2(1Y6B)

[Raw transfer]




00J_A_2(2XIR)

[Raw transfer]




AV9_A_2(4ASE)

[Raw transfer]




900_A_3(3B8Q)
VGFR2_HUMAN
[Raw transfer]




00J_A_2(2XIR)

[Raw transfer]




LIF_B_2(1YWN)

[Raw transfer]




994_B_2(2P2H)

[Raw transfer]




F8B_A_2(6GQQ)

[Raw transfer]




A96_A_3(3DTW)
VGFR2_HUMAN
[Raw transfer]




BPK_A_2(3VHK)

[Raw transfer]




AAZ_A_2(1Y6A)

[Raw transfer]




B49_A_2(4AGD)

[Raw transfer]




DTT_A_3(3WZD)

[Raw transfer]




KIM_A_4(3CJG)

[Raw transfer]




81 HHSearch 65.0577%-133 - C4 -4ASE 10.0
2 PsiBlast_PDB 64.90100%-124 - C4 -3HNG 8.7
7 PsiBlast_PDB 64.6666%-139 - C4 -4AGC 9.5
10 PsiBlast_PDB 64.3166%-130 - C4 -4ASE 10.0
9 PsiBlast_PDB 64.1166%-128 - C4 -4ASD 9.8
87 HHSearch 63.9577%-139 - C4 -2XIR 9.6
12 PsiBlast_PDB 63.9567%-128 - C4 -3VO3 9.4
6 PsiBlast_PDB 63.7873%-132 - C4 -3VHE 10.6
11 PsiBlast_PDB 63.6267%-127 - C4 -3VNT 9.9
24 Blastp_CBE 63.6167%-158 - C4 -3WZD 9.1
88 HHSearch 63.5877%-134 - C4 -3U6J 11.9
23 Blastp_CBE 63.3767%-134 - C4 -3WZE 10.3
16 PsiBlast_PDB 63.1567%-137 - C4 -2XIR 9.6
13 PsiBlast_PDB 63.0466%-124 - C4 -6GQO 10.9
14 PsiBlast_PDB 63.0266%-132 - C4 -6GQP 9.8 ?
45 Blastp_CBE 62.9465%-146 - C4 -2QU5 10.2
3 PsiBlast_PDB 62.9473%-128 - C4 -3VHK 7.0
15 PsiBlast_PDB 62.9266%-132 - C4 -6GQQ 9.8
8 PsiBlast_PDB 62.8766%-141 - C4 -4AGD 7.4
25 Blastp_CBE 62.7366%-130 - C4 -3U6J 11.9
17 PsiBlast_PDB 62.6967%-133 - C4 -4AG8 9.6
40 Blastp_CBE 62.6065%-158 - C4 -3B8R 9.7 VGFR2_HUMAN
26 Blastp_CBE 62.4166%-134 - C4 -3EWH 11.1
39 Blastp_CBE 62.3065%-159 - C4 -3B8R 9.7
18 PsiBlast_PDB 62.2367%-152 - C4 -5EW3 9.3 VGFR2_HUMAN
37 Blastp_CBE 62.2265%-151 - C4 -3CP9 9.1 VGFR2_HUMAN
46 Blastp_CBE 62.1365%-147 - C4 -2P2H 7.3
5 PsiBlast_PDB 62.0873%-162 - C4 -1Y6B 8.7
22 Blastp_CBE 62.0467%-158 - C4 -5EW3 9.3
35 Blastp_CBE 62.0365%-158 - C4 -3CPB 7.0 VGFR2_HUMAN
43 Blastp_CBE 62.0265%-141 - C4 -2RL5 10.0
42 Blastp_CBE 61.9465%-147 - C4 -3B8Q 10.2 VGFR2_HUMAN
33 Blastp_CBE 61.7865%-157 - C4 -3CPC 9.5 VGFR2_HUMAN
30 Blastp_CBE 61.4866%-146 - C4 -2P2I 9.6 VGFR2_HUMAN
31 Blastp_CBE 61.2965%-143 - C4 -3DTW 8.6 VGFR2_HUMAN
44 Blastp_CBE 61.2865%-164 - C4 -2QU6 10.0
27 Blastp_CBE 61.2766%-163 - C4 -3EFL 8.5
4 PsiBlast_PDB 61.2773%-166 - C4 -1Y6A 6.9
28 Blastp_CBE 61.1666%-143 - C4 -3EFL 8.8 VGFR2_HUMAN
20 PsiBlast_PDB 61.0366%-146 - C4 -1YWN 9.7
29 Blastp_CBE 60.9866%-166 - C4 -2P2I 9.1
36 Blastp_CBE 60.9465%-153 - C4 -3CP9 9.0
38 Blastp_CBE 60.9165%-143 - C4 -3BE2 11.4
41 Blastp_CBE 60.9065%-148 - C4 -3B8Q 10.8
32 Blastp_CBE 60.8965%-159 - C4 -3CPC 9.6
34 Blastp_CBE 60.3665%-159 - C4 -3CPB 8.0
47 Blastp_CBE 41.7477%-153 - C4 -3CJG 4.3