@TOME V3
(Feb 2022)

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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2A2_HNF4g: (2021-05-27 )
MNTTDNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSSTDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILLLGNNYVIHRNSCEVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEMLLGGASNDGSHLHHPMHPHLSQDPLTGQTILLGPMSTLVHADQISTPETPLPSPPQGSGQEQYKIAANQASVISHQHLSKQKQL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MYR_C_3(1PZL)
HNF4A_HUMAN
[Raw transfer]



MYR_A_3(3FS1)
HNF4A_HUMAN
[Raw transfer]



DAO_E_5(1M7W)
HNF4A_RAT
[Raw transfer]



PLM_B_2(1LV2)
HNF4G_HUMAN
[Raw transfer]
1 PsiBlast_PDB 84.3982% -77 - C1 -4IQR - HNF4A_HUMAN -
2 PsiBlast_PDB 64.77100%-147 - C1 -1LV2 6.5 HNF4G_HUMAN
9 PsiBlast_PDB 61.7342% -83 - C1 -3E00 - RXRA_HUMAN -
10 PsiBlast_PDB 61.1642% -23 - C1 -4NQA - RXRA_HUMAN -
6 PsiBlast_PDB 58.2478% -74 - C1 -1PZL 6.1 HNF4A_HUMAN
8 PsiBlast_PDB 56.9342% -32 - C1 -3DZU - RXRA_HUMAN -
7 PsiBlast_PDB 56.4180% -75 - C1 -3FS1 5.0 HNF4A_HUMAN
11 PsiBlast_PDB 50.5342% -24 - C1 -5UAN - RXRA_HUMAN -
3 PsiBlast_PDB 50.3276% -80 - C1 -1M7W 5.2 HNF4A_RAT
4 PsiBlast_PDB 45.8078% -82 - C1 -6CHT - HNF4A_HUMAN -
5 PsiBlast_PDB 37.2379% -73 - C1 -4B7W - HNF4A_HUMAN -
19 PsiBlast_PDB 25.5044% -89 - C1 -3KWY - RXRA_HUMAN -
18 PsiBlast_PDB 25.4244% -83 * C1 *3E94 - RXRA_HUMAN -
15 PsiBlast_PDB 25.3344% -80 - C1 -4OC7 - RXRA_HUMAN -
14 PsiBlast_PDB 22.9045% -86 - C1 -1DKF - RXRA_MOUSE -
17 PsiBlast_PDB 21.9544%-106 - C1 -6JNO - RXRA_HUMAN -
16 PsiBlast_PDB 21.7744%-107 - C1 -5ZQU - RXRA_HUMAN -
20 PsiBlast_PDB 18.9544%-102 - C1 -4N5G - RXRA_HUMAN -
13 PsiBlast_PDB 17.4738%-105 - C1 -1Z5X - ? -
12 PsiBlast_PDB 14.5838% 11 - C1 -6HN6 - RXRA_HUMAN -