@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2B3_RXRg: (2021-05-27 )
MYGNYSHFMKFPAGYGGSPGHTGSTSMSPSAALSTGKPMDSHPSYTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HXA_E_5(1MV9)
RXRA_HUMAN
[Raw transfer]




BM6_E_5(1MVC)
RXRA_HUMAN
[Raw transfer]




BM6_I_9(1MZN)
RXRA_HUMAN
[Raw transfer]




PLM_A_5(7A79)
RXRG_HUMAN
[Raw transfer]




PLM_B_6(7A79)

[Raw transfer]




754_A_3(6STI)
RXRA_HUMAN
[Raw transfer]




REA_C_3(1FBY)
RXRA_HUMAN
[Raw transfer]




3TN_A_3(2P1T)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3E00)
RXRA_HUMAN
[Raw transfer]




REA_A_11(3DZU)
RXRA_HUMAN
[Raw transfer]




9CR_A_9(5UAN)
RXRA_HUMAN
[Raw transfer]




2QO_A_3(4OC7)
RXRA_HUMAN
[Raw transfer]




TBY_A_3(3E94)
RXRA_HUMAN
[Raw transfer]




T9T_A_3(3KWY)
RXRA_HUMAN
[Raw transfer]




9HF_A_5(5ZQU)
RXRA_HUMAN
[Raw transfer]




K08_A_5(4N8R)
RXRA_HUMAN
[Raw transfer]




K09_A_5(4N5G)
RXRA_HUMAN
[Raw transfer]




9HF_A_6(5ZQU)
RXRA_HUMAN
[Raw transfer]




4 PsiBlast_PDB 87.6283%-139 * C1 *5UAN 7.2 RXRA_HUMAN
3 PsiBlast_PDB 85.3183% -43 - C1 -4NQA - RXRA_HUMAN -
2 PsiBlast_PDB 83.7772%-128 - C1 -3E00 7.7 RXRA_HUMAN
1 PsiBlast_PDB 82.8672%-127 - C1 -3DZU 7.2 RXRA_HUMAN
19 PsiBlast_PDB 74.7886%-130 - C1 -1MZN 9.8 RXRA_HUMAN
21 Blastp_CBE 74.76100%-136 - C1 -7A79 6.7
22 Blastp_CBE 74.23100%-137 - C1 -7A79 7.2 RXRG_HUMAN
16 PsiBlast_PDB 71.0786%-137 - C1 -6STI 10.5 RXRA_HUMAN
18 PsiBlast_PDB 70.6686%-133 - C1 -1MVC 10.2 RXRA_HUMAN
20 PsiBlast_PDB 70.2586%-139 - C1 -2P1T 9.7 RXRA_HUMAN
17 PsiBlast_PDB 70.1086%-130 - C1 -1MV9 8.8 RXRA_HUMAN
7 PsiBlast_PDB 69.9886%-134 - C1 -4OC7 7.5 RXRA_HUMAN
11 PsiBlast_PDB 69.5686%-138 - C1 -3E94 5.8 RXRA_HUMAN
12 PsiBlast_PDB 68.7286%-140 - C1 -3KWY 7.5 RXRA_HUMAN
10 PsiBlast_PDB 66.2286%-117 - C1 -1FBY 8.0 RXRA_HUMAN
5 PsiBlast_PDB 63.00100%-140 - C1 -2GL8 - RXRG_HUMAN -
8 PsiBlast_PDB 62.8486%-154 - C1 -5ZQU 6.8 RXRA_HUMAN
9 PsiBlast_PDB 62.5986%-161 - C1 -6JNO - RXRA_HUMAN -
13 PsiBlast_PDB 62.3286%-158 - C1 -4N5G 8.4 RXRA_HUMAN
15 PsiBlast_PDB 62.2786%-156 - C1 -5TBP - RXRA_HUMAN -
14 PsiBlast_PDB 61.4386%-148 - C1 -4N8R 8.2 RXRA_HUMAN