@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR2F2_COT2: (2021-05-27 )
MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

9HF_A_5(5ZQU)
RXRA_HUMAN
[Raw transfer]
4 PsiBlast_PDB 74.3143% -60 - C1 -4NQA - RXRA_HUMAN -
3 PsiBlast_PDB 63.3941% -69 - C1 -3E00 - RXRA_HUMAN -
2 PsiBlast_PDB 63.1441% -68 - C1 -3DZU - RXRA_HUMAN -
1 PsiBlast_PDB 61.4999%-172 - C1 -3CJW - COT2_HUMAN -
5 PsiBlast_PDB 53.9043% -71 - C1 -5UAN - RXRA_HUMAN -
6 PsiBlast_PDB 50.4538% -50 - C1 -4IQR - HNF4A_HUMAN -
11 PsiBlast_PDB 33.9945%-181 - C1 -4LOG - MALE_ECOLI (first) -
9 PsiBlast_PDB 31.6145%-124 - C1 -3EYB - ? -
7 PsiBlast_PDB 28.3338% -56 - C1 -6HN6 - RXRA_HUMAN -
10 PsiBlast_PDB 27.1943% -20 - C1 -1DKF - RXRA_MOUSE -
12 PsiBlast_PDB 25.0343% -24 - C1 -4OC7 - RXRA_HUMAN -
20 PsiBlast_PDB 24.6843% -30 * C1 *6STI - RXRA_HUMAN -
15 PsiBlast_PDB 24.4743% -31 - C1 -3E94 - RXRA_HUMAN -
16 PsiBlast_PDB 21.6243% -27 - C1 -3KWY - RXRA_HUMAN -
8 PsiBlast_PDB 16.9243%-116 - C1 -2GL8 - RXRG_HUMAN -
14 PsiBlast_PDB 15.0743% -20 - C1 -6JNO - RXRA_HUMAN -
18 PsiBlast_PDB 14.7243% -19 - C1 -4N8R - RXRA_HUMAN -
13 PsiBlast_PDB 14.3743% -15 - C1 -5ZQU 7.0 RXRA_HUMAN
17 PsiBlast_PDB 13.0343% -13 - C1 -4N5G - RXRA_HUMAN -
19 PsiBlast_PDB 12.4943% -18 - C1 -5TBP - RXRA_HUMAN -