@TOME V3
(Feb 2022)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR4A2_NURR1: (2021-05-27 )
MPCVQAQYGSSPQGASPASQSYSYHSSGEYSSDFLTPEFVKFSMDLTNTEITATTSLPSFSTFMDNYSTGYDVKPPCLYQMPLSGQQSSIKVEDIQMHNYQQHSHLPPQSEEMMPHSGSVYYKPSSPPTPTTPGFQVQHSPMWDDPGSLHNFHQNYVATTHMIEQRKTPVSRLSLFSFKQSPPGTPVSSCQMRFDGPLHVPMNPEPAGSHHVVDGQTFAVPNPIRKPASMGFPGLQIGHASQLLDTQVPSPPSRGSPSNEGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFLDTLPF

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_B_3(4RZF)

[Raw transfer]



GOL_B_3(4RZE)

[Raw transfer]



GOL_B_3(4RE8)

[Raw transfer]



GOL_B_3(4RZG)

[Raw transfer]



GOL_B_3(4WHF)

[Raw transfer]



GOL_B_3(4WHG)

[Raw transfer]



GOL_A_9(4JGV)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4KZM)

[Raw transfer]



GOL_B_3(3V3E)

[Raw transfer]



TMY_A_4(3V3Q)
NR4A1_HUMAN
[Raw transfer]



GOL_B_3(4REF)

[Raw transfer]



GOL_B_3(4KZJ)

[Raw transfer]



GOL_B_3(4REE)

[Raw transfer]



GOL_B_3(4KZI)

[Raw transfer]
2 PsiBlast_PDB 84.90100%-172 - C1 -5Y41 - NR4A2_HUMAN -
25 Blastp_CBE 82.17100%-174 - C1 -5Y41 - -
4 PsiBlast_PDB 74.3499%-175 - C1 -1OVL - NR4A2_HUMAN -
3 PsiBlast_PDB 72.98100%-184 - C1 -5YD6 - NR4A2_HUMAN -
1 PsiBlast_PDB 72.52100%-162 - C1 -6DDA - NR4A2_HUMAN -
22 Blastp_CBE 71.36100%-177 - C1 -5YD6 - -
24 Blastp_CBE 69.11100%-185 * C1 *5YD6 - NR4A2_HUMAN -
21 Blastp_CBE 67.47100%-173 - C1 -6DDA - -
23 Blastp_CBE 61.60100%-172 - C1 -5YD6 - NR4A2_HUMAN -
26 Blastp_CBE 56.1099%-169 - C1 -6DDA - NR4A2_HUMAN -
18 PsiBlast_PDB 51.3364%-166 - C1 -4RZF 1.0
14 PsiBlast_PDB 51.1165%-166 - C1 -4REE 0.4
7 PsiBlast_PDB 48.9365%-163 - C1 -3V3E 2.5
12 PsiBlast_PDB 47.7265%-161 - C1 -4RZG 0.1
9 PsiBlast_PDB 46.1865%-167 - C1 -4KZI 0.2
8 PsiBlast_PDB 44.9365%-168 - C1 -3V3Q 3.7 NR4A1_HUMAN
11 PsiBlast_PDB 42.1565%-162 - C1 -4WHG 2.1
19 PsiBlast_PDB 38.2164%-169 - C1 -4RZE 0.1
15 PsiBlast_PDB 37.2464%-164 - C1 -4KZM 2.2
17 PsiBlast_PDB 36.5464%-160 - C1 -4REF 2.1
13 PsiBlast_PDB 33.1765%-168 - C1 -4RE8 0.1
16 PsiBlast_PDB 32.6764%-170 - C1 -4KZJ 2.1
6 PsiBlast_PDB 28.3665%-156 - C1 -4JGV 1.8 NR4A1_HUMAN
10 PsiBlast_PDB 27.6165%-159 - C1 -4WHF 0.2