Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMGAAAKLAFAVFLISCSSGAILGRSETQECLFFNANWEKDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCVEKKDSPEVYFCCCEGNMCNEKFSYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLMLIAGIVICAFWVYRHHKMAYPPVLVPTQDPGPPPPSPLLGLKPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPI-----QDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSW--NELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLTNIITTEDIVTVVTMVTNVDFPPKESSL
5JSM Chain:C ((23-209))--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSFGTVYKGKWHGD-VAVKMLNVTAPTPQQLQAFKNEVGV--LRKTRHVNILLFMG-----YSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH----------AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATE---------------SILWMAPEVIR--MQDSNPYSFQSDVYAFGIVLYELMT------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5JSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 691 -22037 -31.89 -134.37
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain C : 0.61

3D Compatibility (PKB) : -31.89
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.126

(partial model without unconserved sides chains):
PDB file : Tito_5JSM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5jsm-query.scw
PDB file : Tito_Scwrl_5JSM.pdb: