Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAESAGASSFFPLVVLLLAGSGGSGPRGVQALLCACTSCLQANYTCETDGACMVSIFNLDGMEHHVRTCIPKVELVPAGKPFYCLSSEDLRNTHCCYTDYCNRIDLRVPSGHLKEPEHPSMWGPVELVGIIAGPVFLLFLIIIIVFLVINYHQRVYHNRQRLDMEDPSCEMCLSKDKTLQDLVYDLSTSGSGSGLPLFVQRTVARTIVLQEIIGKGRFGEVWRGRWR--GGDVAVKIFSSREERSWF-----REAEIYQTVMLRHENILGFIAADNKDNGTWTQ-LWLVSDYHEH---GSLFDYLNRYTVT-IEGMIKLALSAASGLAHLHMEIVGTQGKPGIAHRDLKSKNILVKKNGMCAIADLGLAVRHDAVTDTIDIAPNQ--RVGTKRYMAPEVLDETINMKHFDSFKCADIYALGLVYWEIARRCNSGGVHEEYQLPYYDLVPSDPSIEEMRKVVCDQKLRPNIPNWWQSYEALRVMGKMMRECWYANGAARLTALRIKKTLSQLSVQEDVKI
3BLR Chain:A ((26-206))--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQ--LLKHENVVNLIEICRT-------SIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLN---GLYYIH--------RNKILHRDMKAANVLITRDGVLKLADFGLA---RAFSLA----PNRYNRVVTLWYRPPELL-----------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3BLR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 557 -12438 -22.33 -84.61
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -22.33
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.074

(partial model without unconserved sides chains):
PDB file : Tito_3BLR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3blr-query.scw
PDB file : Tito_Scwrl_3BLR.pdb: