Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMGAAAKLAFAVFLISCSSGAILGRSETQECLFFNANWEKDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCVEKKDSPEVYFCCCEGNMCNEKFSYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLMLIAGIVICAFWVYRHHKMAYPPVLVPTQDPGPPPPSPLLGLKPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKA-NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA-LKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLTNIITTEDIVTVVTMVTNVDFPPKESSL
5NXD Chain:B ((49-218))-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVKVMRSLDHPNVLKFIGVLYK----DKKLNLLTEYIEGGTLKDFLRSMDPFPWQQKVRFAKGIASGMAYLHS----------MCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIV---------------PYWMAPEMLNGKSYDE-----TVDIFSFGIVLCEIIGQVYA--------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5NXD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 548 -52640 -96.06 -387.06
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain B : 0.59

3D Compatibility (PKB) : -96.06
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.091

(partial model without unconserved sides chains):
PDB file : Tito_5NXD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5nxd-query.scw
PDB file : Tito_Scwrl_5NXD.pdb: